PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28643.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 392aa    MW: 44878.9 Da    PI: 4.8499
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28643.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws++++sf+v+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
    KHN28643.1  15 FLTKTYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLLKNIH 102
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN28643.1 103 RRKP 106
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-39499IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3610104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-6411104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMEEAQGNSS SLPPFLTKTY EMVDDPSTNS IVSWSATNRS FIVWNPPEFS RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKIDP EQWEFANDDF VRGQPHLLKN IHRRKPVHSH SLQNIQGQGS  120
SLLTESERRS FKDEIEKLKH EKERLLRELE RHEQEWKMYE VQLQHSNDCL EKLEKKQESL  180
VSSVSQVLQK PGIALNLLLL TENMDRKRRL PRSGLFSDDA GIEDHMETSP VLPRENADGS  240
SIFSSSTERL DLLESSMTFW EDITHDVGDI FVQSHLNLDF DASTSCADSP AISCVQLEVE  300
DQPKSPGINM NSEPSVVAVP DLDASKEQPV GKAPVTTGVN DIFWERFLTE NPGSSEMQEA  360
QSERKDSDGR SNAKFWWNIR NVNNPPEQMG HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-251010424129Heat shock factor protein 1
5d5v_B1e-251010424129Heat shock factor protein 1
5d5u_B1e-251010424129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546045.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-125HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0B2R9K90.0A0A0B2R9K9_GLYSO; Heat stress transcription factor A-4a
TrEMBLI1MEV90.0I1MEV9_SOYBN; Uncharacterized protein
STRINGGLYMA15G09280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-107heat shock transcription factor A4A
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]